Smart chemical sensing microsystem : towards a nose-on-a-chip

The electronic nose is a rudimentary replica of the human olfactory system. However there has been considerable commercial interest in the use of electronic nose systems in application areas such as environmental, medical, security and food industry. In many ways the existing electronic nose systems are considerable inferior when compared to their biological counterparts, lacking in terms of discrimination capability, processing time and environmental adaptation. Here, the aim is to extract biological principles from the mammalian olfactory systems to create a new architecture in order to aid the implementation of a nose-on-a-chip system. The primary feature identified in this study was the nasal chromatography phenomena which may provide significant improvement by producing discriminatory spatio-temporal signals for electronic nose systems. In this project, two different but complimentary groups of systems have been designed and fabricated to investigate the feasibility of generating spatio-temporal signals. The first group of systems include the fast-nose (channel 10 cm x 500 μm2), proto-nose I (channel 1.2 m x 500 μm2) and II (channel 2.4 m x 500 μm2) systems that were build using discrete components. The fast-nose system was used to characterise the discrete sensors prior to use. The proto-nose systems, in many ways, resembles gas chromatography systems. Each proto-nose system consists of two microchannels (with and without coating) and 40 polymer-composite sensors of 10 different materials placed along it. The second group of systems include the hybrid-nose and the aVLSI-nose microsensor arrays assembled with microchannel packages of various lengths (5 cm, 32 cm, 7lcm, 240 cm) to form nose-on-a-chip systems. The hybrid-nose sensor array consists of 80 microsensors built on a 10 mm x 10 mm silicon substrate while the aVLSI-nose sensor array consists of 70 microsensors built on a 10 mm x 5 mm silicon substrate using standard CMOS process with smart integrated circuitries. The microchannel packages were fabricated using the Perfactory microstereolithography system. The most advanced microchannel package contains a 2.4 m x 500 J.lm2 microchannel with an external size of only 36 mm x 27 mm x 7 mm. The nose-on-a-chip system achieved miniaturisation and eliminates the need for any external processing circuitries while achieving the same capability of producing spatio-temporal signals. Using a custom-designed vapour test station and data acquisition electronics, these systems were evaluated with simple analytes and complex odours. The experimental results were in-line with the simulation results. On the coated proto-nose II system, a 25 s temporal delay was observed on the toluene vapour pulse compared to ethanol vapour pulse; this is significant compared to the uncoated system where no delay difference was obtained. Further testing with 8 analyte mixtures substantiated that spatio-temporal signals can be extracted from both the coated proto-nose and nose-on-a-chip (hybrid-nose sensor array with 2.4 m long microchannel) systems. This clearly demonstrates that these systems were capable of imitating certain characteristics of the biological olfactory system. Using only the temporal data, classification was performed with principal components analysis. The results reinforced that these additional temporal signals were useful to improve discrimination analysis which is not possible with any existing sensor-based electronic nose system. In addition, fast responding polymer-composite sensors were achieved exhibiting response times of less than 100 ms. Other biological characteristics relating to stereolfaction (two nostrils sniffing at different rates), sniffing rate (flow velocity) and duration (pulse width) were also investigated. The results converge with the biological observations that stereolfaction and sniffing at higher rate and duration improve discrimination. Last but not least, the characterisation of the smart circuitries on the aVLSI-nose show that it is possible to achieve better performance through the use of smart processing circuitries incorporating a novel DC-offset cancellation technique to amplify small sensor response with large baseline voltage. The results and theories presented in this study should provide useful contribution for designing a higher-performance electronic nose incorporating biological principles

Rapid microwave-assisted CNBr cleavage of bead-bound peptides

Large libraries of peptides, cyclic peptides, and other molecules are standard tools for the discovery of drugs, molecular probes, and affinity reagents. In particular, one-bead-one-compound (OBOC) libraries,(1) prepared by the split-and-mix method,(2) provide access to a broad chemical space with a minimum of reagents. Once such a library has been screened against the target of interest, the chemical identity of the library elements on the hit beads is identified. For peptide libraries and their variants, mass spectrometry (MS) based peptide sequencing provides the most rapid method for such analysis. OBOC libraries are constructed in a number of ways to facilitate MS analysis,(3-5) but one common feature is that the peptide must be cleaved from the bead prior to being introduced into the mass spectrometer. While a number of chemical(6) and photochemical(7) cleavage strategies have been developed, the most common strategy is to incorporate a CNBr-cleavable methionine-linker group at the C-terminus of the peptide.(8) CNBr cleavage has also been widely used in proteomics to cleave proteins.(9) With such chemistry, up to 100 beads from an OBOC peptide library can be sequenced in a 24 h period.(10) A large fraction of that time, however, is devoted to the CNBr cleavage step. Standard literature protocols describe CNBr cleavage as requiring between 12 and 24 h, using 20−30 μL of 0.25 M CNBr in 70% aqueous formic acid at room temperature.(11) Although the CNBr cleavage time may be reduced to 2−4 h at elevated temperatures (47 °C), significant side-products may be generated.(12) All reports that we have found that describe CNBr cleavage chemistry from single beads have used the same conditions as for proteomics, although the two chemical processes are not necessarily equivalent

Prevalence and awareness of lower urinary tract symptoms among males in the Outpatient Clinics of Universiti Kebangsaan Malaysia Medical Centre.

This study aims to determine the prevalence of lower urinary tract symptoms (LUTS) and level of awareness among male outpatients in Universiti Kebangsaan Malaysia Medical Centre (UKMMC). A questionnaire consisting of demographic data, questions related to knowledge, attitude and practice on BPH and the International Prostate Symptom Score (IPSS) was used for this study. Uroflowmetry and bladder scan were used to evaluate the function of the urinary tract and severity of BPH. Urine dipstick was done for glycosuria, proteinuria and haematuria. A total of 220 respondents were surveyed. The prevalence of moderately and severely symptomatic LUTS was 42.7%. The most commonly reported LUTS were nocturia (78.2%), frequency (58.2%) and incomplete emptying (44.6%). The prevalence of glycosuria, proteinuria and haematuria were 23.6%, 11.4% and 1.8% respectively. There was a significant association between increasing age with the severity of LUTS (p=0.005). Out of 102 respondents with voided urine volume greater than 150 mL, there was a significant decrease in maximum (Qmax) (p=0.039) and average (Qave) urine flow rates with every 10 years increase of age (p=0.001). The majority of respondents (59.5%) have heard of BPH before. Over 78.2% of the respondents would seek medical attention if they have LUTS with 15.9% saying they would seek traditional treatment. In conclusion, the prevalence of LUTS was high and the level of awareness was satisfactory

Accurate MALDI-TOF/TOF Sequencing of One-Bead−One-Compound Peptide Libraries with Application to the Identification of Multiligand Protein Affinity Agents Using in Situ Click Chemistry Screening

Combinatorial one-bead−one-compound (OBOC) peptide libraries are widely used for affinity screening, and the sequencing of peptides from hit beads is a key step in the process. For rapid sequencing, CNBr cleavage of the peptides from the beads, followed by de novo sequencing by MALDI-TOF/TOF, is explored. We report on a semiautomated sequencing algorithm and validate it through comparison against Edman degradation sequencing. The initial 44% sequencing success rate of the standard de novo sequencing software was improved to nearly 100%. The sequencing algorithm incorporates existing knowledge of amino acid chemistry and a new strategy for differentiating isobaric amino acids. We tested the algorithm by using MALDI-TOF/TOF to identify a peptide biligand affinity agent against the protein bovine carbonic anhydrase II, starting from comprehensive one-bead−one-compound peptide libraries comprised of non-natural and artificial amino acid components and using the strategy of in situ click/OBOC library screening

Reconstruction of Phonated Speech from Whispers Using Formant-Derived Plausible Pitch Modulation

Whispering is a natural, unphonated, secondary aspect of speech communications for most people. However, it is the primary mechanism of communications for some speakers who have impaired voice production mechanisms, such as partial laryngectomees, as well as for those prescribed voice rest, which often follows surgery or damage to the larynx. Unlike most people, who choose when to whisper and when not to, these speakers may have little choice but to rely on whispers for much of their daily vocal interaction. Even though most speakers will whisper at times, and some speakers can only whisper, the majority of today’s computational speech technology systems assume or require phonated speech. This article considers conversion of whispers into natural-sounding phonated speech as a noninvasive prosthetic aid for people with voice impairments who can only whisper. As a by-product, the technique is also useful for unimpaired speakers who choose to whisper. Speech reconstruction systems can be classified into those requiring training and those that do not. Among the latter, a recent parametric reconstruction framework is explored and then enhanced through a refined estimation of plausible pitch from weighted formant differences. The improved reconstruction framework, with proposed formant-derived artificial pitch modulation, is validated through subjective and objective comparison tests alongside state-of-the-art alternatives

A Unified Framework for GPS Code and Carrier-Phase Multipath Mitigation Using Support Vector Regression

Multipath mitigation is a long-standing problem in global positioning system (GPS) research and is essential for improving the accuracy and precision of positioning solutions. In this work, we consider multipath error estimation as a regression problem and propose a unified framework for both code and carrier-phase multipath mitigation for ground fixed GPS stations. We use the kernel support vector machine to predict multipath errors, since it is known to potentially offer better-performance traditional models, such as neural networks. The predicted multipath error is then used to correct GPS measurements. We empirically show that the proposed method can reduce the code multipath error standard deviation up to 79% on average, which significantly outperforms other approaches in the literature. A comparative analysis of reduction of double-differential carrier-phase multipath error reveals that a 57% reduction is also achieved. Furthermore, by simulation, we also show that this method is robust to coexisting signals of phenomena (e.g., seismic signals) we wish to preserve

Growth media derived from solid waste for orchid Dendrobium kingianum culture

Food waste and diaper waste contribute to top three ranking solid wastes in Malaysia. Many studies show that urine and food waste can be used as plant fertilizer but less attention has been given to the recycling of used diaper. Therefore, this study was conducted to formulate Dendrobium kingianum growing media by utilizing diaper waste and selected food waste: banana peels, coffee waste and eggshells. The chemical composition in diaper waste and food waste were determined by using ICP-OES method. Biochar derived from oil palm waste, sugarcane and sawdust were tested to reduce and neutralize the high ammonium content from diaper waste. Biochar derived from oil palm waste showed the best reduction of ammonium in diaper waste. Survival and growth performance of Dendrobium kingianum was observed and recorded. Results show that orchid in diaper formulated growth media T3 showed the best adaptation and growth performance with highest percentage of healthy leaves and number of absorption roots within 3 weeks observation period. These results revealed that diaper waste could be recycled as orchid growing media by formulating with food waste and biochar

Therapeutic capsule endoscopy: Opportunities and challenges

ABSTRACT The increasing demand for non-invasive (or less-invasive) monitoring and treatment of medical conditions has attracted both physicians and engineers to work together and investigate new methodologies. Wireless capsule endoscopy is a successful example of such techniques which has become an accepted routine for diagnostic inspection of the gastrointestinal tract. This method offers a non-invasive alternative to traditional endoscopy and provides the opportunity for exploring distal areas of the small intestine which are otherwise not accessible. Despite these advantages, wireless capsule endoscopy is still limited in functionality compared to traditional endoscopy. Wireless capsule endoscopes with advanced functionalities, such as biopsy or drug delivery, are highly desirable. In this article, the current status of wireless capsule endoscopy is reviewed together with some of its possible therapeutic applications as well as the existing challenges

Multi-Modality Imaging of Atheromatous Plaques in Peripheral Arterial Disease: Integrating Molecular and Imaging Markers

Peripheral artery disease (PAD) is a common and debilitating condition characterized by the narrowing of the limb arteries, primarily due to atherosclerosis. Non-invasive multi-modality imaging approaches using computed tomography (CT), magnetic resonance imaging (MRI), and nuclear imaging have emerged as valuable tools for assessing PAD atheromatous plaques and vessel walls. This review provides an overview of these different imaging techniques, their advantages, limitations, and recent advancements. In addition, this review highlights the importance of molecular markers, including those related to inflammation, endothelial dysfunction, and oxidative stress, in PAD pathophysiology. The potential of integrating molecular and imaging markers for an improved understanding of PAD is also discussed. Despite the promise of this integrative approach, there remain several challenges, including technical limitations in imaging modalities and the need for novel molecular marker discovery and validation. Addressing these challenges and embracing future directions in the field will be essential for maximizing the potential of molecular and imaging markers for improving PAD patient outcomes

Performance Evaluation of Various 2-D Laser Scanners for Mobile Robot Map Building and Localization

A study has been carried out to investigate the performance of various 2-D laser scanners, which influence the map building quality and localization performance for a mobile robot. Laser scanners are increasingly used in automation and robotic applications. They are widely used as sensing devices for map building and localization in navigation of mobile robot. Laser scanners are commercially available, but there is very little published information on the performance comparison of various laser scanners on the mobile robot map building and localization. Hence, this work studies the performance by comparing four laser scanners which are Hokuyo URG04LX-UG01, Hokuyo UTM30LX, SICK TIM551 and Pepperl Fuchs ODM30M. The results, which are verified by comparison with the reference experimental data, indicated that the angle resolution and sensing range of laser scanner are key factors affecting the map building quality and position estimation for localization. From the experiment, laser scanner with 0.25° angle resolution is optimum enough for building a map of sufficient quality for good localization performance. With 30meter of sensing range, a laser scanner can also result in better localization performance, especially in big environment